Package: FVDDPpkg 0.1.2

FVDDPpkg: Implement Fleming-Viot-Dependent Dirichlet Processes

A Bayesian Nonparametric model for the study of time-evolving frequencies, which has become renowned in the study of population genetics. The model consists of a Hidden Markov Model (HMM) in which the latent signal is a distribution-valued stochastic process that takes the form of a finite mixture of Dirichlet Processes, indexed by vectors that count how many times each value is observed in the population. The package implements methodologies presented in Ascolani, Lijoi and Ruggiero (2021) <doi:10.1214/20-BA1206> and Ascolani, Lijoi and Ruggiero (2023) <doi:10.3150/22-BEJ1504> that make it possible to study the process at the time of data collection or to predict its evolution in future or in the past.

Authors:Stefano Damato [aut, cre]

FVDDPpkg_0.1.2.tar.gz
FVDDPpkg_0.1.2.zip(r-4.5)FVDDPpkg_0.1.2.zip(r-4.4)FVDDPpkg_0.1.2.zip(r-4.3)
FVDDPpkg_0.1.2.tgz(r-4.5-x86_64)FVDDPpkg_0.1.2.tgz(r-4.5-arm64)FVDDPpkg_0.1.2.tgz(r-4.4-x86_64)FVDDPpkg_0.1.2.tgz(r-4.4-arm64)FVDDPpkg_0.1.2.tgz(r-4.3-x86_64)FVDDPpkg_0.1.2.tgz(r-4.3-arm64)
FVDDPpkg_0.1.2.tar.gz(r-4.5-noble)FVDDPpkg_0.1.2.tar.gz(r-4.4-noble)
FVDDPpkg_0.1.2.tgz(r-4.4-emscripten)FVDDPpkg_0.1.2.tgz(r-4.3-emscripten)
FVDDPpkg.pdf |FVDDPpkg.html
FVDDPpkg/json (API)

# Install 'FVDDPpkg' in R:
install.packages('FVDDPpkg', repos = c('https://stefanodamato.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/stefanodamato/fvddppkg/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

4.00 score 1 scripts 174 downloads 11 exports 3 dependencies

Last updated 9 months agofrom:4fa3e911df. Checks:12 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 08 2025
R-4.5-win-x86_64OKMar 08 2025
R-4.5-mac-x86_64OKMar 08 2025
R-4.5-mac-aarch64OKMar 08 2025
R-4.5-linux-x86_64OKMar 08 2025
R-4.4-win-x86_64OKMar 08 2025
R-4.4-mac-x86_64OKMar 08 2025
R-4.4-mac-aarch64OKMar 08 2025
R-4.4-linux-x86_64OKMar 08 2025
R-4.3-win-x86_64OKMar 08 2025
R-4.3-mac-x86_64OKMar 08 2025
R-4.3-mac-aarch64OKMar 08 2025

Exports:approx.propagateapprox.smootherror.estimateinitializepolya.sampleposterior.samplepredictive.structpropagateprunesmoothupdate

Dependencies:rbibutilsRcppRdpack

FVDDPpkg

Rendered fromFVDDPpkg.Rmdusingknitr::rmarkdownon Mar 08 2025.

Last update: 2024-06-28
Started: 2023-09-14